Talks

2025 Understanding Cellular Architecture with Interactive Machine Learning (invited) volumeEM Gordon Research Conference
2025 Lessons learned from the Kaggle challenge (invited panel) CZII CryoET Object Identification Workshop
2024 napari tutorial DL@MBL 2024
2024 Top Five Artificial Life Papers of All Time Last Monkey Standing chat
2023 napari workshop Halfway to I2K 2023
2023 State of the Art in Machine Learning for Bioimage Analysis (invited) Microscopy and Microanalysis 2023, Minneapolis
2023 napari workshop Microscopy and Microanalysis 2023, Minneapolis
2023 What's next for napari? napari Plugin Foundations Grant Showcase, CZI (virtual)
2021 Algorithms and computational tools for image data analysis across scales iNAMES Graduate Program, Max Delbrück Center, Berlin
2021 Algorithms and computational tools for image data analysis across scales (keynote) Ultrahigh Field Magnetic Resonance Symposium, Berlin
2021 Image data solutions across biological scales Max Delbrück Center, Berlin
2021 Image Data Solutions for Systems Biology and Beyond (invited) Center for Advanced Systems Understanding (CASUS), Görlitz
2021 Realtime 3D graphics and VR with Kotlin and Vulkan FOSDEM 2021, Kotlin devroom
2020 Interactive 3D and virtual reality visualization for scientific images with sciview (tutorial, with Ulrik Günther) I2K 2020
2020 Emergence of animal conflict from neurodevelopmental wiring: an artificial life model J-theory, Janelia Research Campus, HHMI
2019 Multiscale modeling and visualization with biological images Center for Cell Analysis and Modeling Seminar, UConn, Farmington, CT
2019 Modeling from Morphology to Molecules: Blood Vessels to Synaptic Plasticity J-theory, Janelia Research Campus, HHMI
2019 The Artificial Life of Image-based Modeling for Morphogenesis Image-based Modeling and Simulation 2019
2018 Bringing biological images to life: modeling and visualization Wisconsin Institute for Discovery
2018 Evolution of genetically-regulated swarming strategies HHMI Collective Computation Conference
2017 Image-based Modeling Data Science Day, Washington State University, Pullman, WA
2017 Functional Scientific Programming: Bringing Images to Life BosLab, Somerville, MA
2017 Image-based Computational Biology IBEST, University of Idaho, Moscow, ID
2017 Fishing is in the Blood: Modeling, Quantification and Visualization of Zebrafish Vascular Development Max Planck Institute of Molecular Cell Biology and Genetics, Dresden
2017 Computational Modeling of Physical Systems: from Chemistries to Organisms (invited) IRIT Symposium, University of Toulouse
2017 Machine Learning (invited) 2IS Innovative Information Systems, University of Toulouse
2017 Escalation of Complexity through Competition BEACON Institute, Michigan State University & University of Idaho
2017 Image-based Modeling for Biological Systems (invited) 2017 NIH IDeA Western Regional Conference
2017 Biological Image Analysis using the ImageJ/Fiji Software Ecosystem ImageXD, University of Washington, Seattle, WA
2017 Developing Computational Models with Biological Images Mathematical Biology Seminar, Washington State University, Pullman, WA
2016 Escalation in the Complexity of Cooperative Strategies Institute for Bioinformatics and Evolutionary Studies, University of Idaho
2016 Virtual Morphogenesis: Toward Growing Models with Images Laboratory for Optical and Computational Instrumentation, University of Wisconsin, Madison, WI
2016 Virtual Morphogenesis: Directing Pattern Formation Center for Modeling Complex Interactions, University of Idaho
2016 Virtualization and Simulation for Biology and Evolution Idaho EPSCoR Annual Meeting, Coeur d'Alene, ID
2015 Scientific Computing with Clojure Clojure/Conj 2015, Philadelphia, PA
2015 Functional Image Processing in ImageJ/FIJI Bioimage Informatics 2015, NIST, Gaithersburg, MD
2014 Evolution, the First Programmer HHMI Interfaces Award Lecture Series, Waltham, MA
2014 Bridging Structure and Evolution (with A. Brilot) HHMI Interfaces Award Lecture Series, Waltham, MA
2014 Coevolution in Hide and Seek: Camouflage and Vision ALife 14, New York, NY
2013 Robot Coverage Control by Evolved Neuromodulation IJCNN 2013, Dallas, TX
2013 Embracing the Inner Cyborg: the Computational Immunology of Organ Transplantation (with J. Chin) Quantitative Biology Graduate Talks, Brandeis University
2012 Autoconstructive Evolution for Structural Problems GECCO 2012, Philadelphia, PA
2011 Communicated Somatic Markers Benefit the Individual and the Species IJCNN 2011, San Jose, CA
2011 Evolving Evolution Quantitative Biology Graduate Talks, Brandeis University
2011 Evolving Evolution: part 1, Variation ALFA Group, MIT, Cambridge, MA
2011 Compositional Autoconstructive Dynamics ICCS 2011, Quincy, MA
2010 Robot Phylogenetics GECCO 2010, Portland, OR
2010 Attention to Details: from a Single-Cell to a Multi-cellular Observer Boston College, Boston, MA
2008 Artificial Embryogenesis Greythumb Artificial Life Group, Cambridge, MA
2007 Predicting Reactions from Amino Acid Sequences in S. cerevisiae: an Evolutionary Computation Approach GECCO 2007, London, UK