napari-imagej: ImageJ Ecosystem Access from napari
This paper presents napari-imagej, a plugin that integrates the ImageJ ecosystem with napari, enabling access to ImageJ functions directly from napari without the need for extensive porting or maintenance.
Oct 23, 2023
RS-FISH: precise, interactive, fast, and scalable FISH spot detection
RS-FISH is a software tool for accurate and fast spot detection in microscopy images, supporting large datasets and offering interactive parameter tuning.
Dec 1, 2022
SNT: a unifying toolbox for quantification of neuronal anatomy
SNT is a comprehensive framework for neuronal morphometry and connectomics, providing tools for tracing, proof-editing, visualization, quantification, and modeling of neuroanatomy, available via Fiji's ImageJ distribution.
Apr 1, 2021
Tales from the Trenches: Developing sciview, a new 3D viewer for the ImageJ community
This paper describes the development of sciview, a modern 3D viewer for the ImageJ community, highlighting sustainable development, community building, and software engineering best practices.
Apr 28, 2020
FunImageJ: a Lisp framework for scientific image processing
FunImageJ is a Lisp framework for scientific image processing built upon the ImageJ software ecosystem, offering a functional programming style and performance suitable for big data biological image analysis.
Feb 26, 2018
SciView
SciView is an ImageJ/FIJI plugin for 3D visualization of images and meshes. It uses scenery as a rendering backend and supports rendering to VR headsets via OpenVR.
Jul 8, 2016