napari Tutorial DL at MBL 2024
This is the napari tutorial for DL at MBL 2024
Aug 27, 2024
Polarity-JaM: An image analysis toolbox for cell polarity, junction and morphology quantification
Polarity-JaM is an open-source Python package for image analysis of cell polarity, junction, and morphology, featuring deep learning-based segmentation and advanced statistical tools for comprehensive analysis.
Apr 26, 2024
RS-FISH: precise, interactive, fast, and scalable FISH spot detection
RS-FISH is a software tool for accurate and fast spot detection in microscopy images, supporting large datasets and offering interactive parameter tuning.
Dec 1, 2022
SNT: a unifying toolbox for quantification of neuronal anatomy
SNT is a comprehensive framework for neuronal morphometry and connectomics, providing tools for tracing, proof-editing, visualization, quantification, and modeling of neuroanatomy, available via Fiji's ImageJ distribution.
Apr 1, 2021
Multi-sample SPIM image acquisition, processing and analysis of vascular growth in zebrafish
We present a workflow for multi-sample SPIM imaging, processing, and analysis to study vascular growth in zebrafish, allowing simultaneous imaging and automated data processing, yielding precise quantification of vascular development.
Mar 20, 2019