- album: album is a tool for sharing and
creating polyglot, multi-tool scientific software solutions
- SNT: SNT is a semi-automated
tracing, visualization, analysis, and modeling tool for neuronal analysis
- sciview: SciView is an ImageJ/FIJI plugin for visualization and interaction with 3D data
- scenery: Realtime rendering with Virtual
Reality, powered by Kotlin, OpenGL and Vulkan
- atom-imagej-mode:
Editing ImageJ scripts using the Atom editor
- pyGRN: A Python library for modeling
and evolving artificial gene-regulatory networks (GRNs)
- GRNEAT: An evolutionary
algorithm designed for the optimization of artificial
gene-regulatory networks (GRNs)
- brevis: A functional artificial life simulator
- fun.imagej: Functional programming for scientific image processing
- Clojush: Contributor to Clojure implementation of the Push programming language.
- breve: Contributor to breve: a 3D multiagent and artificial life simulator. See Jon Klein’s original implementation
- Mush: Matlab implementation of the Push programming language.
- clj-qrun: Open-source cluster parallelization software compatible with ROCKS and Pixar clusters