• SNT: SNT is a semi-automated tracing, visualization, analysis, and modeling tool for neuronal analysis
  • sciview: SciView is an ImageJ/FIJI plugin for visualization and interaction with 3D data
  • scenery: Realtime rendering with Virtual Reality, powered by Kotlin, OpenGL and Vulkan
  • atom-imagej-mode: Editing ImageJ scripts using the Atom editor
  • pyGRN: A Python library for modeling and evolving artificial gene-regulatory networks (GRNs)
  • GRNEAT: An evolutionary algorithm designed for the optimization of artificial gene-regulatory networks (GRNs)
  • brevis: A functional artificial life simulator
  • fun.imagej: Functional programming for scientific image processing
  • Clojush: Contributor to Clojure implementation of the Push programming language.
  • breve: Contributor to breve: a 3D multiagent and artificial life simulator. See Jon Klein’s original implementation
  • Mush: Matlab implementation of the Push programming language.
  • clj-qrun: Open-source cluster parallelization software compatible with ROCKS and Pixar clusters