Open-source Tools for CryoET Particle Picking Machine Learning Competitions
An ML competition and open-source tools for cryoET particle picking, enabling better data handling, labeling, and visualization for advancing structural biology.
Nov 4, 2024
Annotating CryoET Volumes: A Machine Learning Challenge
A machine learning challenge and data portal to automate the annotation of cryoET volumes, advancing protein complex identification in cellular environments.
Nov 4, 2024
Surforama: interactive exploration of volumetric data by leveraging 3D surfaces
Surforama is a Python package and napari plugin for interactive visualization, annotation, and analysis of proteins in cryo-ET data, with results exportable as RELION-formatted STAR files.
Jul 2, 2024
Polarity-JaM: An image analysis toolbox for cell polarity, junction and morphology quantification
Polarity-JaM is an open-source Python package for image analysis of cell polarity, junction, and morphology, featuring deep learning-based segmentation and advanced statistical tools for comprehensive analysis.
Apr 26, 2024
Neuromodulated Learning in Deep Neural Networks
This paper proposes a method of deep artificial neuromodulation for stochastic gradient descent, applying biological neuromodulation concepts to modify learning parameters at each layer in a deep neural network during training. The method shows adaptability to different models and new problems, demonstrating dynamic, location-specific learning strategies.
Dec 11, 2018
Escalation of Memory Length in Finite Populations
This study explores the escalation of strategic complexity in coevolutionary systems, using an expanded model of memory length evolution. It demonstrates that larger population sizes support greater complexity escalation and that such escalation is sensitive to perturbations during transitions.
Apr 25, 2017