Kyle Harrington

Bioimaging and visualization · 2021

SNT: a unifying toolbox for quantification of neuronal anatomy

Cameron Arshadi, Ulrik Günther, Mark Eddison, Kyle I. S. Harrington, Tiago A. Ferreira

Nature Methods, 18(4)

doi:10.1038/s41592-021-01105-7pdfcodebibtex

Abstract

SNT is an end-to-end framework for neuronal morphometry and whole-brain connectomics that supports tracing, proof-editing, visualization, quantification, and modeling of neuroanatomy. With an open architecture, a large user base, community-based documentation, support for complex imagery, and several model organisms, SNT is a flexible resource for the broad neuroscience community. SNT is both a desktop application and multi-language scripting library, and it is available through the Fiji distribution of ImageJ.