Publications

Ella Bahry, Laura Breimann, Marwan Zouinkhi, Leo Epstein, Klim Kolyvanov, Nicholas Mamrak, Benjamin King, Xi Long, Kyle I. S. Harrington, Timothée Lionnet, Stephan Preibisch (2022). RS-FISH: precise, interactive, fast, and scalable FISH spot detection. Nature Methods, 19(12).

Rani Barbara, Madhu Nagathihalli Kantharaju, Ravid Haruvi, Kyle Harrington, Takashi Kawashima (2022). PyZebrascope: An Open-Source Platform for Brain-Wide Neural Activity Imaging in Zebrafish. Frontiers in Cell and Developmental Biology, 10.

Robert Wiese, Kyle Harrington, Kai Hartmann, Manja Hethke, Thomas Von Rintelen, Hucai Zhang, Le-Jia Zhang, Frank Riedel (2022). Can fractal dimensions objectivize gastropod shell morphometrics? A case study from Lake Lugu (SW China). Ecology and Evolution, 12(e8622).

Kai Fan, Ranil Dhammapala, Kyle Harrington, Ryan Lamastro, Brian Lamb, Yunha Lee (2022). Development of a Machine Learning Approach for Local-Scale Ozone Forecasting: Application to Kennewick, WA. Front. Big Data.

Leo Epstein, Zeth Dubois, Jessica Smith, Yunha Lee, Kyle Harrington (2021). Complex population dynamics in a spatial microbial ecosystem with Physarum polycephalum. Biosystems, 208(104334).

Cameron Arshadi, Ulrik Günther, Mark Eddison, Kyle I. S. Harrington, Tiago A. Ferreira (2021). SNT: a unifying toolbox for quantification of neuronal anatomy. Nature Methods, 18(4).

Bahti Zakirov, Georgios Charalambous, Raphael Thuret, Irene M. Aspalter, Kelvin Van-Vuuren, Thomas Mead, Kyle Harrington, Erzsébet Ravasz Regan, Shane Paul Herbert, Katie Bentley (2021). Active perception during angiogenesis: filopodia speed up Notch selection of tip cells in silico and in vivo. Phil. Trans. R. Soc. B.

Ulrik Günther, Kyle I. S. Harrington, Raimund Dachselt, Ivo F. Sbalzarini (2020). Bionic Tracking: Using Eye Tracking to Track Biological Cells in Virtual Reality. In ICAROB-2020.

Ulrik Günther, Kyle I.S. Harrington (2020). Tales from the Trenches: Developing sciview, a new 3D viewer for the ImageJ community. In VisGap 2020.

Ulrik Günther, Tobias Pietzsch, Aryaman Gupta, Kyle Harrington, Pavel Tomancak, Stefan Gumhold, Ivo F. Sbalzarini (2020). scenery: Flexible Virtual Reality Visualization on the Java VM. In VIS 2019.