Publications

Leo Epstein, Zeth Dubois, Jessica Smith, Yunha Lee, Kyle Harrington (2021). Complex population dynamics in a spatial microbial ecosystem with Physarum polycephalum. Biosystems, 208(104334).

Cameron Arshadi, Ulrik Günther, Mark Eddison, Kyle I. S. Harrington, Tiago A. Ferreira (2021). SNT: a unifying toolbox for quantification of neuronal anatomy. Nature Methods, 18(4).

Bahti Zakirov, Georgios Charalambous, Raphael Thuret, Irene M. Aspalter, Kelvin Van-Vuuren, Thomas Mead, Kyle Harrington, Erzsébet Ravasz Regan, Shane Paul Herbert, Katie Bentley (2021). Active perception during angiogenesis: filopodia speed up Notch selection of tip cells in silico and in vivo. Phil. Trans. R. Soc. B.

Ulrik Günther, Kyle I. S. Harrington, Raimund Dachselt, Ivo F. Sbalzarini (2020). Bionic Tracking: Using Eye Tracking to Track Biological Cells in Virtual Reality. In ICAROB-2020.

Ulrik Günther, Kyle I.S. Harrington (2020). Tales from the Trenches: Developing sciview, a new 3D viewer for the ImageJ community. In VisGap 2020.

Ulrik Günther, Tobias Pietzsch, Aryaman Gupta, Kyle Harrington, Pavel Tomancak, Stefan Gumhold, Ivo F. Sbalzarini (2020). scenery: Flexible Virtual Reality Visualization on the Java VM. In VIS 2019.

Claudia Prahst, Parham Ashrafzadeh, Thomas Mead, Ana Figueiredo, Karen Chang, Douglas Richardson, Lakshmi Venkaraman, Mark Richards, Ana Martins Russo, Kyle Harrington, Marie Ouarné, Andreia Pena, Dong Feng Chen, Lena Claesson-Welsh, Kin-Sang Cho, Claudio a Franco, Katie Bentley (2020). Mouse retinal cell behaviour in space and time using light sheet fluorescence microscopy. eLife, 9.

Amnon Sharir, Pauline Marangoni, Rapolas Zilionis, Mian Wan, Tomas Wald, Jimmy K. Hu, Kyogo Kawaguchi, David Castillo-Azofeifa, Leo Epstein, Kyle Harrington, Pierfrancesco Pagella, Thimios Mitsiadis, Christian W. Siebel, Allon M. Klein, Ophir D. Klein (2019). A large pool of actively cycling progenitors orchestrates self-renewal and injury repair of an ectodermal appendage. Nature Cell Biology, 21(9).

Stephan Daetwyler, Ulrik Günther, Carl D. Modes, Kyle I. S. Harrington, Jan Huisken (2019). Multi-sample SPIM image acquisition, processing and analysis of vascular growth in zebrafish. Development, 146(dev173757).

Dennis G. Wilson, Sylvain Cussat-Blanc, Herve Luga, Kyle Harrington (2018). Neuromodulated Learning in Deep Neural Networks. arXiv.