Publications

(2024). Surforama: interactive exploration of volumetric data by leveraging 3D surfaces. bioRxiv.
(2024). Polarity-JaM: An image analysis toolbox for cell polarity, junction and morphology quantification. bioRxiv.
(2023). napari-imagej: ImageJ Ecosystem Access from napari. Nature Methods, 20(10), 1443-1444.
(2023). Single‐cell profiling and zebrafish avatars reveal LGALS1 as immunomodulating target in glioblastoma. EMBO Molecular Medicine, 15(e18144).
(2023). A Connectome of the Male Drosophila Ventral Nerve Cord. bioRxiv.
(2023). Machine learning-based ozone and PM2.5 forecasting: Application to multiple AQS sites in the Pacific Northwest. Frontiers in Big Data, 6.
(2022). RS-FISH: precise, interactive, fast, and scalable FISH spot detection. Nature Methods, 19(12).
(2022). PyZebrascope: An Open-Source Platform for Brain-Wide Neural Activity Imaging in Zebrafish. Frontiers in Cell and Developmental Biology, 10.
(2022). Can fractal dimensions objectivize gastropod shell morphometrics? A case study from Lake Lugu (SW China). Ecology and Evolution, 12(e8622).
(2022). Development of a Machine Learning Approach for Local-Scale Ozone Forecasting: Application to Kennewick, WA. Front. Big Data.