Kyle Harrington
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  • Projects
    • CZII CryoET Object Identification
    • CellCanvas
    • album
    • SciView
    • brevis
  • Publications
    • Annotating CryoET Volumes: A Machine Learning Challenge
    • Open-source Tools for CryoET Particle Picking Machine Learning Competitions
    • Surforama: interactive exploration of volumetric data by leveraging 3D surfaces
    • Polarity-JaM: An image analysis toolbox for cell polarity, junction and morphology quantification
    • napari-imagej: ImageJ Ecosystem Access from napari
    • Single‐cell profiling and zebrafish avatars reveal LGALS1 as immunomodulating target in glioblastoma
    • A Connectome of the Male Drosophila Ventral Nerve Cord
    • Machine learning-based ozone and PM2.5 forecasting: Application to multiple AQS sites in the Pacific Northwest
    • RS-FISH: precise, interactive, fast, and scalable FISH spot detection
    • PyZebrascope: An Open-Source Platform for Brain-Wide Neural Activity Imaging in Zebrafish
    • Can fractal dimensions objectivize gastropod shell morphometrics? A case study from Lake Lugu (SW China)
    • Development of a Machine Learning Approach for Local-Scale Ozone Forecasting: Application to Kennewick, WA
    • Complex population dynamics in a spatial microbial ecosystem with Physarum polycephalum
    • SNT: a unifying toolbox for quantification of neuronal anatomy
    • Active perception during angiogenesis: filopodia speed up Notch selection of tip cells in silico and in vivo
    • Bionic Tracking: Using Eye Tracking to Track Biological Cells in Virtual Reality
    • Tales from the Trenches: Developing sciview, a new 3D viewer for the ImageJ community
    • scenery: Flexible Virtual Reality Visualization on the Java VM
    • Mouse retinal cell behaviour in space and time using light sheet fluorescence microscopy
    • A large pool of actively cycling progenitors orchestrates self-renewal and injury repair of an ectodermal appendage
    • Multi-sample SPIM image acquisition, processing and analysis of vascular growth in zebrafish
    • Neuromodulated Learning in Deep Neural Networks
    • FunImageJ: a Lisp framework for scientific image processing
    • Competitive Dynamics in Eco-evolutionary Genetically-regulated Swarms
    • Escalation of Memory Length in Finite Populations
    • Escalation of Memory Length in Finite Populations
    • Asymmetric division coordinates collective cell migration in angiogenesis
    • A circuit basis for morphogenesis
    • Configurable NOR gate arrays from Belousov-Zhabotinsky micro-droplets
    • Temporal modulation of collective cell behavior controls vascular network topology
    • Genetically-regulated Neuromodulation Facilitates Multi-Task Reinforcement Learning
    • Gene Regulatory Network Evolution Through Augmenting Topologies
    • Can active perception generate bistability? Heterogeneous collective dynamics and vascular patterning
    • Feedback Control of Evolving Swarms
    • The Resilience of a Swarm Ecosystem Under Environmental Variation
    • Coevolution in Hide and Seek: Camouflage and Vision
    • Eco-evolutionary dynamics of complex social strategies in microbial communities
    • Eco-evolutionary dynamics of complex social strategies in microbial communities
    • Robot Coverage Control by Neuromodulation
    • Computational Neuroecology of Communicated Somatic Markers
    • Autoconstructive Evolution for Structural Problems
    • Tag-Based Modularity in Tree-Based Genetic Programming
    • The Effects of Finite Populations and Selection on the Emergence of Signaling
    • The Effects of Tags on the Evolution of Honest Signaling
    • Imaging analysis of clock neurons: light buffers the wake-promoting effect of dopamine
    • Communicated Somatic Markers Benefit Both the Individual and the Species
    • Tag-Based Modules in Genetic Programming
    • What’s in an Evolved Name? The Evolution of Modularity via Tag-Based Reference
    • En Route to Signal Inversion in Chemical Computing
    • Emotions for Strategic Real-Time Systems
    • Adaptive Multi-modal Sensors
    • Teaching the Evolution of Behavior with SuperDuperWalker
    • Selection Songs: Evolutionary Music Computation
  • Recent & Upcoming Talks
    • napari tutorial at DL@MBL 2024
    • Dr. Kyle Harrington: Top Five Artificial Life Papers of All Time
    • State of the Art in Machine Learning for Bioimage Analysis (invited)
  • Teaching
    • napari Tutorial DL at MBL 2024
    • Introduction to Machine Learning and Data Mining
  • Projects
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  • Blog

brevis

Jan 28, 2013 · 1 min read
Go to Project Site

Brevis is an open-source scientific and artificial life simulator that uses the functional language, Clojure, for writing simulations.

Last updated on Jan 28, 2013
Brevis Artificial Life 3D Visualization Agent-Based Modeling
Kyle Harrington
Authors
Kyle Harrington
Team Lead for Machine Learning
← SciView Jul 8, 2016

© 2024 Kyle Harrington. This work is licensed under CC BY NC ND 4.0

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