Kyle Harrington ☕️
Kyle Harrington

Team Lead for Machine Learning

Chan Zuckerberg Institute for Advanced Biological Imaging

About Me

Kyle Harrington is a Team Lead for Machine Learning at the Chan Zuckerberg Institute for Advanced Biological Imaging in Redwood City, CA. His research interests include machine learning, deep learning, and innovative research in biological imaging. He applies both qualitative and quantitative methods to explore the role of science and technology in living systems.

Download CV
Interests
  • Artificial Intelligence
  • Machine Learning
  • Computational Biology
Education

  • Postdoctoral Fellow, Pathology

    Harvard Medical School

  • PhD Computer Science

    Brandeis University

  • MA Computer Science

    Brandeis University

  • BA Artificial Life

    Hampshire College

📚 My Research

I’m Kyle Harrington, a Team Lead for Machine Learning at the Chan Zuckerberg Institute for Advanced Biological Imaging. I work on machine learning, deep learning, and innovative research in biological imaging. I apply qualitative and quantitative methods to explore the role of science and technology in living systems.

Reach out to collaborate!

Featured Publications
Surforama: interactive exploration of volumetric data by leveraging 3D surfaces
SNT: a unifying toolbox for quantification of neuronal anatomy
Multi-sample SPIM image acquisition, processing and analysis of vascular growth in zebrafish
Recent Publications
Kevin A. Yamauchi, Lorenz Lamm, Lorenzo Gaifas, Ricardo D. Righetto, Daniil Litvinov, Benjamin D. Engel, Kyle Harrington (2024). Surforama: interactive exploration of volumetric data by leveraging 3D surfaces. bioRxiv.
PDF Code Dataset Poster Video Source Document DOI Custom Link
Wolfgang Giese, Jan Philipp Albrecht, Olya Oppenheim, Emir Bora Akmeriç, Julia Kraxner, Deborah Schmidt, Kyle Harrington, Holger Gerhardt (2024). Polarity-JaM: An image analysis toolbox for cell polarity, junction and morphology quantification. bioRxiv.
PDF Code Source Document DOI
Gabriel J. Selzer, Curtis T. Rueden, Mark C. Hiner, Edward L. Evans, Kyle I. S. Harrington, Kevin W. Eliceiri (2023). napari-imagej: ImageJ Ecosystem Access from napari. Nature Methods, 20(10), 1443-1444.
PDF Code Source Document DOI
Lise Finotto, Basiel Cole, Wolfgang Giese, Elisabeth Baumann, Annelies Claeys, Maxime Vanmechelen, Brecht Decraene, Marleen Derweduwe, Nikolina Dubroja Lakic, Gautam Shankar, Madhu Nagathihalli Kantharaju, Jan Philipp Albrecht, Ilse Geudens, Fabio Stanchi, Keith L. Ligon, Bram Boeckx, Diether Lambrechts, Kyle Harrington, Ludo Van Den Bosch, Steven De Vleeschouwer, Frederik De Smet, Holger Gerhardt (2023). Single‐cell profiling and zebrafish avatars reveal LGALS1 as immunomodulating target in glioblastoma. EMBO Molecular Medicine, 15(e18144).
PDF DOI
Shin-Ya Takemura, Kenneth J Hayworth, Gary B Huang, Michal Januszewski, Zhiyuan Lu, Elizabeth C Marin, Stephan Preibisch, C Shan Xu, John Bogovic, Andrew S Champion, Han SJ Cheong, Marta Costa, Katharina Eichler, William Katz, Christopher Knecht, Feng Li, Billy J Morris, Christopher Ordish, Patricia K Rivlin, Philipp Schlegel, Kazunori Shinomiya, Tomke Stürner, Ting Zhao, Griffin Badalamente, Dennis Bailey, Paul Brooks, Brandon S Canino, Jody Clements, Michael Cook, Octave Duclos, Christopher R Dunne, Kelli Fairbanks, Siqi Fang, Samantha Finley-May, Audrey Francis, Reed George, Marina Gkantia, Kyle Harrington, Gary Patrick Hopkins, Joseph Hsu, Philip M Hubbard, Alexandre Javier, Dagmar Kainmueller, Wyatt Korff, Julie Kovalyak, Dominik Krzemiński, Shirley a Lauchie, Alanna Lohff, Charli Maldonado, Emily a Manley, Caroline Mooney, Erika Neace, Matthew Nichols, Omotara Ogundeyi, Nneoma Okeoma, Tyler Paterson, Elliott Phillips, Emily M Phillips, Caitlin Ribeiro, Sean M Ryan, Jon Thomson Rymer, Anne K Scott, Ashley L Scott, David Shepherd, Aya Shinomiya, Claire Smith, Natalie Smith, Alia Suleiman, Satoko Takemura, Iris Talebi, Imaan FM Tamimi, Eric T Trautman, Lowell Umayam, John J Walsh, Tansy Yang, Gerald M Rubin, Louis K Scheffer, Jan Funke, Stephan Saalfeld, Harald F Hess, Stephen M Plaza, Gwyneth M Card, Gregory SXE Jefferis, Stuart Berg (2023). A Connectome of the Male Drosophila Ventral Nerve Cord. bioRxiv.
PDF DOI
See all publications
Recent & Upcoming Talks
Recent News